Destrieux Atlas

This notebook shows the section and subsection of the Destrieux Atlas.

#@title

import os
import math
import matplotlib
import numpy as np
import pandas as pd
import scipy.stats
import seaborn as sns
import matplotlib.pyplot as plt
from collections import Counter

from sklearn.linear_model import LinearRegression
from utils import get_regression_metrics, bland_altman_plot
from settings import RESOURCE_DIR

# Tables format

pd.set_option('display.float_format', lambda x: f"{x: 0.2e}")

template_name = "a2009s"


#@title


df_names_rois = pd.read_csv(os.path.join(RESOURCE_DIR, "template", f"{template_name}_atlas_labels.csv"))
df_names_rois

	ID	label	name
0	1	G_and_S_frontomargin	Fronto-marginal gyrus and sulcus
1	2	G_and_S_occipital_inf	Inferior occipital gyrus and sulcus
2	3	G_and_S_paracentral	Paracentral lobule and sulcus
3	4	G_and_S_subcentral	Subcentral gyrus and sulci
4	5	G_and_S_transv_frontopol	Transverse frontopolar gyri and sulci
...	...	...	...
69	70	S_suborbital	Suborbital sulcus
70	71	S_subparietal	Subparietal sulcus
71	72	S_temporal_inf	Inferior temporal sulcus
72	73	S_temporal_sup	Superior temporal sulcus
73	74	S_temporal_transverse	Transverse temporal sulcus

74 rows × 3 columns

#@title
df_areas = pd.read_csv(os.path.join(RESOURCE_DIR, "template", f"{template_name}_rois_areas.csv"))
df_areas

	Area	SubArea	SubSubArea	Label
0	Frontal Lobe	Limits of the frontal lobe	Limits of the frontal lobe	S_central
1	Frontal Lobe	Limits of the frontal lobe	Limits of the frontal lobe	S_cingul-Marginalis
2	Frontal Lobe	Main Frontal sulci and gyri	Lateral aspect of the frontal lobe	S_precentral-sup-part
3	Frontal Lobe	Main Frontal sulci and gyri	Lateral aspect of the frontal lobe	S_precentral-inf-part
4	Frontal Lobe	Main Frontal sulci and gyri	Lateral aspect of the frontal lobe	G_precentral
...	...	...	...	...
83	Limbic lobe	Limbic gyrus	Limbic gyrus	G_and_S_cingul-Mid-Ant
84	Limbic lobe	Limbic gyrus	Limbic gyrus	G_and_S_cingul-Mid-Post
85	Limbic lobe	Limbic gyrus	Limbic gyrus	G_cingul-Post-dorsal
86	Limbic lobe	Limbic gyrus	Limbic gyrus	G_cingul-Post-ventral
87	Limbic lobe	Limbic gyrus	Limbic gyrus	G_oc-temp_med-Parahip

88 rows × 4 columns